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aaindex-9.1 abyss-1.3.0 allpaths-3.1 allpathslg-40063 amap-2.2-r2 amos-3.1.0 ApE-2.0.7 arb-5.2 ariadne-1.3-r2 augustus-2.5.5 bamtools-1.0.2 beast-mcmc-1.5.2 bedtools-2.15.0 bfast-0.7.0a biogrep-1.0-r1 bioperl-9999-r1 bioperl-db-9999-r1 bioperl-network-9999-r1 bioperl-run-9999-r1 biopython-1.59 bioruby-1.4.2 biosql-1.0.1 blat-34-r1 blossoc-1.4.0 bowtie-0.12.7 bwa-0.6.1 cd-hit-4.5.4 clustal-omega-1.0.3 clustalw-2.1 clustalw-mpi-0.13-r1 clustalx-2.1 consed-19-r2 cufflinks-1.3.0 cutg-160 dialign-tx-1.0.2-r1 diya-1.0_rc4 elph-1.0.1 embassy-6.1.0 embassy-cbstools-1.0.0-r1 embassy-domainatrix-0.1.0-r4 embassy-domalign-0.1.0-r4 embassy-domsearch-0.1.0-r4 embassy-emnu-1.05-r6 embassy-esim4-1.0.0-r6 embassy-hmmer-2.3.2-r3 embassy-iprscan-4.3.1-r1 embassy-memenew-4.0.0 embassy-mira-2.8.2-r1 embassy-mse-1.0.0-r7 embassy-phylipnew-3.68 embassy-signature-0.1.0-r4 embassy-structure-0.1.0-r4 embassy-topo-1.0.0-r6 embassy-vienna-1.7.2-r1 emboss-6.3.1_p4 eugene-3.6-r1 exonerate-2.2.0-r1 express-0.9.5 fasta-35.4.10 fasttree-2.0.1 finchtv-1.3.1-r1 foldingathome-6.34-r2 gatk-1.5 GBrowse-2.48 gibbs-3.1 glimmer-3.02-r2 glimmerhmm-3.0.1-r1 gmap-2011.10.07 goby-1.9.8.1 goby-cpp-1.9.8.1 hmmer-3.0 iedera-1.04 infernal-1.0.2-r1 iqpnni-3.3.2 kalign-2.03-r1 lagan-2.0-r2 last-192 mafft-6.811 mammoth-1.0 maq-0.7.1-r1 maqview-0.2.5-r1 mcl-08.312 meme-4.4.0 mira-3.2.1 mosaik-1.0.1388 mothur-1.13.0-r1 mrbayes-3.1.2-r1 mummer-3.22-r1 muscle-3.8.31 ncbi-tools-20100808 ncbi-tools++-2010.06.15-r1 newick-utils-1.5.0 njplot-2.3 pals-1.0 paml-4.4c phrap-1.080812 phred-071220 phylip-3.69 phyml-2.4.5-r2 picard-1.63 piler-1.0 pilercr-1.0 plink-1.07-r1 poa-2-r1 prank-111130 primer3-2.3.0 prints-39.0 probcons-1.12-r1 prodigal-2.60 prosite-20.72 psipred-3.2.1 pysam-0.6 qrna-2.0.3c-r1 raxml-7.2.6 readseq-20080420 rebase-1202 recon-1.06-r1 repeatmasker-3.2.9 repeatmasker-libraries-20090604 rmblast-1.2 rnaview-20040713-r2 samtools-0.1.18 seaview-4.2.12 shrimp-2.1.0 sibsim4-0.20 sim4-20030921-r1 snpfile-2.0.1-r1 staden-bin-1.7.0 stride-20011129-r1 t-coffee-8.93 tophat-2.0.0 transfac-3.2 tree-puzzle-5.2 treeviewx-0.5.1-r2 trf-4.04 trnascan-se-1.23-r2 ucsc-genome-browser-260 unafold-3.8 vaal-1.6 vcftools-0.1.7 velvet-1.0.18-r1 vienna-rna-1.8.5 wgs-assembler-7.0 wise-2.4.0_alpha yass-1.14-r1

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